site stats

Plant cis-acting regulatory elements

WebJan 1, 1999 · Plant cis-acting regulatory DNA elements (PLACE) database: 1999. K Higo Department of Genetic Resources, National Institute of Agrobiological Resources, 2-1-2 Kannondai, Tsukuba,Ibaraki 305, Japan. WebJan 1, 1999 · A database of nucleotide sequence motifs found in plant cis-acting regulatory DNA elements (cis-elements) and a tool for homology searches within such a database …

PlantCARE -- A database of plant cis-acting elements HSLS

WebJan 1, 2002 · At present, we have collected 417 cis-acting regulatory elements, of which 150 are from monocotyledonous species, 263 from dicotyledonous species and four from conifers, describing approximately 160 individual promoters from higher plant genes. The database can be queried on names of transcription factor (TF) sites, motif sequence, … WebApr 7, 2024 · Prediction of cis-acting regulatory elements and Gene Ontology (GO) analysis of the BvSUT promoter region The 2000bp promoter sequence of the sugar beet SUT gene from the sugar beet genome sequence was downloaded to analyze the promoter sequence of the SUT gene. ly3471851 uc https://oakwoodlighting.com

Genome-wide identification and expression analysis of

WebMar 1, 2014 · Use of cis -acting regulatory elements in synthetic promoters is highlighted. • A new approach of developing and using synthetic introns in promoters is presented. • Different promoter gene expression validation approaches are compared. Transcriptomics Gene expression systems 1. Introduction WebApr 9, 2024 · The sequences 2000 bp upstream of the start codon were selected as the promoters for cis-regulatory elements analysis. A total of 50 elements were identified in the promoters of CqTPSs and CqTPPs (Figure 3A,B). The cis-acting elements are classified into five categories, including Light Response, Plant Hormone, Plant Growth, Stress Response … WebMay 6, 2005 · PLACE -- Plant cis-acting regulatory DNA elements cis-acting elements plant cis elements cis-acting regulatory elements DNA-binding sites regulatory sequences … ly3d

IJMS Free Full-Text Genome-Wide Identification and Analysis of ...

Category:Cis-regulatory code of stress-responsive transcription in …

Tags:Plant cis-acting regulatory elements

Plant cis-acting regulatory elements

Genome Annotation Tools: Promoters-Cis Elements

WebJan 1, 1998 · A database of nucleotide sequence motifs found in plant cis -acting regulatory DNA elements ( cis -elements) and a tool for homology searches within such a database will be helpful in estimating the mode of gene regulation, regions involved in such regulation, and other pertinent regions in the DNA sequence. WebMar 23, 2024 · Their promoters possessed a variety of cis-acting elements, most of which are associated with abiotic stresses, followed by phytohormones response and development. Protein-protein interaction analysis suggested that FaU-box members could interact with each other as well as other proteins involved in hormone signaling and stress …

Plant cis-acting regulatory elements

Did you know?

WebJul 23, 2024 · Translation is highly regulated by complex interactions between cis-acting elements and trans-acting factors. Initiation is not only the first phase of translation, but also the core of translational regulation, because it limits the rate of protein synthesis. ... Ting, Anqi Wu, Yaping Yue, and Yu Zhao. 2024. "uORFs: Important Cis-Regulatory ... WebJul 11, 2003 · We discuss the detection of cis-acting regulatory elements using word-counting or probabilistic methods (so-called “search by signal” methods) and the delineation of promoters by considering both sequence content and structural features (“search by content” methods).

WebDec 23, 2024 · We first exploit and analyze auxin-specific cis-regulatory elements for the transcription of the target genes, and then identify putative auxin responsive genes whose … WebApr 12, 2024 · Light responsive elements, cis-acting regulatory elements involved in the hormones or defence and stress responsiveness were the most frequent. Cis-acting ... Dehais P, Thijs G, Marchal K, Moreau Y, Van de Peer Y, et al. PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter ...

WebThe development and improvement of gene expression tools for rapid, efficient, predictable, and high-throughput analysis of promoter components will be critical for confirmation of … WebA Database of Plant Cis-acting Regulatory DNA Elements PLACE is a database of motifs found in plant cis-acting regulatory DNA elements, which were collected from previously …

WebApr 24, 2006 · As of 2003, there were a total of 668 cis-acting regulatory elements that can be queried on TF-site name, motif, function, species, cell type, gene, transcription factor, and literature references. Keywords: plant cis-acting elements plant cis elements cis-acting regulatory elements plant promoters enhancers repressors plant transcription factors

WebPlant Promoter and Regulatory Element Resources AGRIS Currently contains two databases, AtcisDB (Arabidopsis thaliana cis-regulatory database) and AtTFDB (Arabidopsis thaliana … kings park concert 2022WebPlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Magali Lescot, Patrice D hais, Gert Thijs, Kathleen … ly3d lackWebFeb 9, 2024 · Plant cis-acting regulatory DNA elements database: Description: PLACE is a database of nucleotide sequence motifs found in plant cis-acting regulatory DNA … ly3ac24